ZFIN is now using GRCz12tu for Genomic Data
Gene
pcdh11
- ID
- ZDB-GENE-140106-21
- Name
- protocadherin 11
- Symbol
- pcdh11 Nomenclature History
- Previous Names
-
- zmp:0000001061 (1)
- Type
- protein_coding_gene
- Location
- Chr: 14 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable cell adhesion molecule binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell-cell adhesion. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to several human genes including PCDH11X (protocadherin 11 X-linked).
- Genome Resources
- Note
-
pcdh11 is represented by two partial Ensembl gene models in GRCz11.
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | Cadherin conserved site | Cadherin-like | Cadherin-like superfamily | Cadherin, N-terminal | Protocadherin | Protocadherin/Cadherin-related Cell Adhesion |
|---|---|---|---|---|---|---|---|---|
| UniProtKB:A0A8M6Z2R3 | InterPro | 1036 | ||||||
| UniProtKB:A0A8M2BKI4 | InterPro | 1224 | ||||||
| UniProtKB:A0AC58H7L4 | InterPro | 1237 | ||||||
| UniProtKB:A0AC58H7L5 | InterPro | 1050 | ||||||
| UniProtKB:A0AC58H7M1 | InterPro | 1238 | ||||||
| UniProtKB:A0AC58H7M3 | InterPro | 1238 | ||||||
| UniProtKB:A0AC58H7M7 | InterPro | 1036 | ||||||
| UniProtKB:A0AC58H7M8 | InterPro | 1050 | ||||||
| UniProtKB:A0AC58H7M9 | InterPro | 1050 | ||||||
| UniProtKB:A0AC58H7N1 | InterPro | 1049 | ||||||
| UniProtKB:A0AC58H7N5 | InterPro | 1049 | ||||||
| UniProtKB:A0AC58H7N9 | InterPro | 1049 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
pcdh11-202
(1)
|
Ensembl | 3,274 nt | ||
| mRNA |
pcdh11-203
(1)
|
Ensembl | 5,710 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers